Publications

2025

Guinat, C., Fourtune, L., Lambert, S., Martin, E., Gerbier, G., Jimenez Pellicer, A., Guérin, J.L., Vergne T. (2025) Promising effects of duck vaccination against highly pathogenic avian influenza, France 2023-2024. Emerging Infectious Diseases.

European Food Safety Authority (EFSA), Ståhl, K., Boklund, A., Podgórski, T., Vergne, T., Aminalragia-Giamini, R., Abrahantes, J. C., Papaleo, S., Mur, L. (2025). Epidemiological analysis of African swine fever in the European Union during 2024. EFSA Journal. 

Anthonioz, C., Abadie, Y., [many authors], Corbiere, F. (2025) Heterogenous within-herd seroprevalence against epizootic hemorrhagic disease virus type 8 (EHDV-8) after massive virus circulation in cattle in France, 2023. Frontiers in Veterinary Science.

Lambert, S., Godard, C., Vergne T. (2025) Effective mortality thresholds for reporting suspicion of highly pathogenic avian influenza in mule ducks. Veterinary Research.

Montacq, L., [many authors], Vergne, T., Bigarré, L., Bertagnoli, S. (2025) Carp edema virus surveillance in the koi trade: early detection through shipping environment sampling and longitudinal monitoring of CEV outbreaks in a wholesaler facility. Veterinary Research. 

Hayes, B., Bessière, P., Guérin, J.L. (2025) Authors’ response: Statistical methodology critique and alternative approaches in H5Nx avian influenza seroprevalence study among French cats. Eurosurveillance.

Bessière, P., Brun, J., Hayes, B., [many authors], Guérin, J.L. (2025) Cats as sentinels of mammal exposure to H5Nx avian influenza viruses: a seroprevalence study, France, December 2023 to January 2025. Eurosurveillance.

Duarte, F., [many authors], Delpont, M., [many authors], Desvars-Larrive, A., Allepuz, A. (2025) Methods to assess on-farm biosecurity in Europe and beyond. Preventive Veterinary Medicine.

Dórea, F.C., Correia-Gomes, C., Carmo, L.P., Fischer, E.A.J., Messam, L.L.M., Schulz, K., Vergne, T., Brodbelt, D.C. (2025) SVEPM 2024, the annual conference of the Society for Veterinary Epidemiology and Preventive Medicine, Uppsala, Sweden. Preventive Veterinary Medicine.

Le Gall-Ladevèze, C., Vollot, B., Hirschinger, J., [many authors], Guérin, J.L., Paul, M.C., Cappelle, J., Le Loc’h, G. (2025) Limited transmission of avian influenza viruses, avulaviruses, coronaviruses and Chlamydia sp. at the interface between wild birds and a free-range duck farm. Veterinary Research.

Artois, J., Vergne, T., Fourtune, L., Dellicour, S., Scoizec, A., Le Bouquin, S., Guérin, J.L., Paul, M.C., Guinat, C. (2025) Spatial risk modelling of highly pathogenic avian influenza in France: Fattening duck farm activity matters. PLoS ONE.

Lambert, S., Fourtune, L., Hobbelen, P.H.F., Baca, J., Gonzales, J.L., Elbers, A.R.W., Vergne, T. (2025) Optimizing contact tracing for avian influenza in poultry flocks. Journal of the Royal Society Interface.

EFSA Panel on Animal Health and Animal Welfare (AHAW), [many authors], Guinat, C., [many authors], Broglia, A., Melidou, A.. (2025) Preparedness, prevention and control related to zoonotic avian influenza. EFSA Journal.

Planchand, S., Vergne, T., Guérin, J.L, Rautureau, S., Gerbier, G., Lambert, S. (2025) Surveillance Strategy in Duck Flocks Vaccinated against Highly Pathogenic Avian Influenza Virus. Emerging Infectious Diseases.

Dupas, M.C., [many authors], Guinat, C., Vergne, T., [many authors], Marius Gilbert, Simon Dellicour. (2025). Global risk mapping of highly pathogenic avian influenza H5N1 and H5Nx in the light of epidemic episodes occurring from 2020 onward. eLife.

Wicki, M., Fassier, T., Huau, C., Corbière, F., Rupp, R. (2025) Genetic and environmental determinants of Immunoglobulin G in kid serum and adult colostrum of dairy goats. Journal of Dairy Science.

2024

Moya, S.,Hibbard, R., Asenjo, G., Skjølstrup, N.K., Chan, K.W., Eberhart, J., Fortané, N., Paul, M.C. (2024) Capturing the complexity of veterinarians’ antibiotic prescribing practices in the livestock sector: a meta-ethnography across contexts: Veterinarians’ antibiotic prescribing in different contexts. JAC Antimicrobial Resistance.

European Food Safety Authority (EFSA), [many authors], Vergne, T., [many authors], Stefania Tampach, Lina Mur. (2024) Risk and protective factors for ASF in domestic pigs and wild boar in the EU, and mitigation measures for managing the disease in wild boar. EFSA Journal.

Delpont, M., Chavoix, C., Fourtune, L., Durivage, A., Guérin, J.L., Vaillancourt, J.P., Paul, M.C. (2024) Making the invisible visible: Effectiveness of a training program to increase awareness and biosecurity compliance in poultry barn anterooms, using glowing substances. Preventive Veterinary Medicine.
 
Hayes, B.H., Lim, J.S., Andraud, M., Verge, T. (2024) Elucidating the influence of wild boar density on African swine fever spread in wild boar populations, Italy, 2022–2023. EFSA Supporting Publications.

Lim J.S., Vergne T., Kim E., Guinat C., Dellicour S., Andraud M. (2024) A spatially-heterogenous impact of fencing on the African swine fever wavefront in the Korean wild boar population. Veterinary Research.

Eberhart J., Comer C., Moya Duran S., Paul M.C., Fortané N. (2024) The European veterinary profession and the challenges of reducing antimicrobial use in livestock farming: lessons from a mixed-methods study. EuroChoices.

Bertin, A., Bonnet, T., Lambert, M., Ludemann, E., Corbière, F., Boucraut, C., Lucas, M.N., Trumel, C. (2024) What is your diagnosis: Acute hemolysis in a Limousin bull. Veterinary Clinical Pathology.

Vergne T., Paul M., Guinat C., Delpont M., Hayes B., Lambert S., Vaillancourt J.P., Guérin J.L. (2024) Highly pathogenic avian influenza management policy in domestic poultry: from reacting to preventing. Eurosurveillance.

Wicki M., Fassier T., Huau C., Corbiere F., Rupp R. (2024) Genetic and environmental determinants of immunoglobulin G in kid serum and adult colostrum of dairy goats. Journal of Dairy Science.

Chapot, L., Hibbard, R., Ariyanto, K.B., Maulana, K.Y., Yufu, H., Febriyani, W., Cameron, A., Paul, M.C., Vergne, T., Faverjon, C. (2024) Needs and capabilities for improving poultry production and health management in Indonesia. PLoS ONE.

Soubeyrand, S., [many authors], Guinat, C., [many authors], Morris, C.E., (2024). Building integrated plant health surveillance: a proactive research agenda for anticipaing and mitigating disease and pest emergence. CABI Agriculture and Bioscience. 

Hibbard, R., Mendelson, M., Page, S.W., Ferreira, J.P., Pulcini, C., Paul, M.C., Faverjon, C. (2024) Antimicrobial stewardship: a definition with a One Health perspective. Nature Antimicrobials and Resistance.

European Food Safety Authority (EFSA), Ståhl, K., Boklund, A., Podgórski, T., Vergne, T., Abrahantes, J. C., Cattaneo, E., Papanikolaou, A., & Mur, L. (2024). Epidemiological analysis of African swine fever in the European Union during 2023. EFSA Journal. 

Moragas-Fernandez C.M., Capdevila A., Ciaravino G., Espluga J., Vergne T., Allepuz A. (2024). Public debate on bovine tuberculosis eradication: Topics and metaphors in the trans-Pyrenees region (Spain and France) 2018-2020. Journal of Rural Studies.

Dorea F.C., Vergne T., Correia-Gomes C., Carmo L.P., Fischer E.A.J., Messam L.L.M, Brodbelt D.C., Robinson P.A. (2024). SVEPM 2023, the annual conference of the Society for Veterinary Epidemiology and Preventive Medicine: Toulouse finally welcomes us in person. Preventive Veterinary Medicine. 

Sanogo I.N., Guinat C., Dellicour S., Diakite M.A., Niang M., Koita O.A., Camus C., Ducatez M. (2024). Genetic insights of H9N2 avian influenza viruses circulating in Mali and phylogeographic patterns in Northern and Western Africa. Virus Evolution.

Moya S., Coviglio A., Belloc C., Comer C., Eberhart J., Fortané N., Paul M.C. (2024). A qualitative analysis of the unwritten rules influencing antibiotic prescribing practices among French poultry veterinarians. JAC Antimicrobial Resistance.

2023

Guérin, J.L., Balloy, D., Pinson, M., Jbenyeni, A., Delpont, M. (2023). Vaccination Technology in Poultry: Principles of Vaccine Administration. Avian Diseases.

Ciaravino, G., Espluga, J., Moragas-Fernández, C., Capdevila, A., Freixa, V., López I Gelats, F., Vergne, T., & Allepuz, A. (2023). Improving the communication between farmers and veterinarians to enhance the acceptability of bovine tuberculosis eradication programmes.Preventive veterinary medicine.

Bessière, P., Hayes, B., Filaire, F., Lèbre, L., Vergne, T., Pinson, M., Croville, G., Guérin, J.L. (2023) Optimizing environmental viral surveillance: bovine serum albumin increases RT-qPCR sensitivity for high pathogenicity avian influenza H5Nx virus detection from dust samples. Microbiology Spectrum.

Lambert S., Bauzile B., Mugnier A., Durand B., Vergne T., Paul M.C. (2023) A systematic review of mechanistic models used to study avian influenza virus transmission and control. Veterinary Research.

Hibbard, R., Chapot, L., Yusuf, H., Ariyanto K.B., Maulana, K.Y., Febriyani, W., Cameron, A., Vergne, T., Faverjon, C., Paul, M.C. (2023) « It’s a habit. They’ve been doing it for decades and they feel good and safe. »: A qualitative study of barriers and opportunities to changin antimicrobial use in the Indonesian poultry sector. PLoS ONE.

Hayes, B.H., Vergne, T., Andraud, M., Rose, N. (2023) Mathematical modelling at the livestock-wildlife interface: scoping review of drivers of disease transmission between species. Frontiers in Veterinary Science.

Chapot, L., Hibbard, R., Ariyanto, K.B., Maulana, K.Y., Yusuf, H., Febriyani, W., Cameron, A., Paul, M.C., Faverjon, C., Vergne, T. (2023) A qualitative analysis of health information-sharing networks in the Indonesian poultry sector. Preventive Veterinary Medicine.

Delpont, M., Salazar L.G., Dewulf, J., Zbikowski, A., Szeleszczuk, P., Dufay-Lefort, A.C., Rousset, N., Spaans, A., Amalraj, A., Tilli, G., Piccirillo, A., Devesa, A., Sevilla-Navarro, S., van Meirhaege, H., Kovacs, L., Jozwiak, A.B., Guérin, J.L., Paul, M.C. (2023) Monitoring biosecurity in poultry production: an overview of databases reporting biosecurity compliance from seven European countries. Frontiers in Veterinary Science.

Bauzile, B., Durand, B., Lambert, S., Rautureau, S., Fourtune, L., Guinat, C., Andronico, A., Cauchemez, S., Paul, M. C., & Vergne, T. (2023). Impact of palmiped farm density on the resilience of the poultry sector to highly pathogenic avian influenza H5N8 in France. Veterinary research.

Gaide, N., Crispo, M., Jbenyeni, A., Bleuart, C., Delverdier, M., Vergne, T., Le Loc’h, G., & Guérin, J. L. (2023). Validation of an RNAscope assay for the detection of avian influenza A virus. Journal of veterinary diagnostic investigation.

European Food Safety Authority (EFSA), Ståhl, K., Boklund, A., Podgórski, T., Vergne, T., Abrahantes, J. C., Papanikolaou, A., Zancanaro, G., & Mur, L. (2023). Epidemiological analysis of African swine fever in the European Union during 2022. EFSA journal. European Food Safety Authority.

Corbiere, F., Guellouz, D., Tasca, C., Foures, L., Dubaux, E., & Foucras, G. (2023). Effects of Silirum®-Based Vaccination Programs on Map Fecal Shedding and Serological Response in Seven French Dairy Herds. Animals.

Guinat, C., Tang, H., Yang, Q., Valenzuela Agüí, C., Vaughan, T. G., Scire, J., Yu, H., Wang, W., Chen, Z., Ducatez, M. F., & Stadler, T. (2023). Bayesian phylodynamics reveals the transmission dynamics of avian influenza A(H7N9) virus at the human-live bird market interface in China. Proceedings of the National Academy of Sciences of the United States of America.

Walker, M., Lambert, S., Neves, M. I., Worsley, A. D., Traub, R., & Colella, V. (2023). Modeling the effectiveness of One Health interventions against the zoonotic hookworm Ancylostoma ceylanicum. Frontiers in medicine.

Lim, J. S., Andraud, M., Kim, E., & Vergne, T. (2023). Three Years of African Swine Fever in South Korea (2019–2021): A Scoping Review of Epidemiological Understanding. Transboundary and emerging diseases.

Kim, E., Lim, J. S., & Pak, S. I. (2023). Mechanistic modelling for African swine fever transmission in the Republic of Korea. Journal of veterinary science.

Ezanno, P., Picault, S., & Vergne, T. (2023). Preface of the African swine fever modelling challenge special issue. Epidemics.

2022

Lambert, S., Durand, B., Andraud, M., Delacourt, R., Scoizec, A., Le Bouquin, S., Rautureau, S., Bauzile, B., Guinat, C., Fourtune, L., Guérin, J. L., Paul, M. C., & Vergne, T. (2022). Two major epidemics of highly pathogenic avian influenza virus H5N8 and H5N1 in domestic poultry in France, 2020-2022. Transboundary and emerging diseases.

Ducrot C., Guénin MJ., Hemonic A., Rousset N., Carre Y., Facon C., Le Coz P., Marguerie J., Petiot JM., Jarnoux M., Leblanc-Maridor M., Paul M., Molia S., Belloc C. (2022) Towards a better use of antimicrobials on farms: insights from a participatory approach in the French pig and poultry sectors. Antibiotics.

Salazar L.G., Rose N., Hayes B., Hammami P., Baubet E., Desvaux S., Andraud M. (2022) Effects of habitat fragmentation and hunting activities on African swine fever dynamics among wild boar populations. Preventive Veterinary Medicine.

Ezanno P., Picault S., Bareille S., Beaunée G., Boender G.J., Dankwa E.A., Deslandes F., Donnelly C.A., Hagenaars T.J., Hayes S., Jori F., Lambert S., Mancini M., Muñoz F., Pleydell D.R.J., Thompson R.B., Vergu E., Vignes M., Vergne T. (2022) The African swine fever modelling challenge: model comparison and lessons learnt. Epidemics.

Picault S., Vergne T., Mancini M., Bareille S., Ezanno P. (2022) The African swine fever modelling challenge: objective, model description and synthetic data generation. Epidemics.

Bessiere P., Vergne T., Battini M., Brun J., Averso J., Joly E., Guérin J.L., Cadiergues M.C. (2022) SARS-CoV-2 infection in companion animals: Prospective serological survey and risk factor analysis in France. Viruses.

Lesueur J., Walachowski S., Barbey S., Cebron N., Lefebvre R., Launay F., Boichard D., Germon P., Corbiere F., Foucras G. (2022) Standardized whole-blood assay and bead-based cytokine profiling reveal commonalities and diversity of the response to bacteria and TLR ligands in cattle. Frontiers in Immunology.

Collineau E., Corbiere F., Darnal S., Holleville N., Salines M. (2022) Analysis of cattle post-mortem condemnation data in France: contributions from a comprehensive and standardised information system at the slaughterhouse. Veterinary Record.

Filaire F., Lebre L., Foret-Lucas C., Vergne T., Daniel P., Lelièvre A., de Barros A., Jbenyeni A., Bolon P., Paul MC., Croville G., GuérinJL. (2022) Dust as sample for detection of highly pathogenic avian influenza virus (H5, clade 2.3.4.4b) in poultry farms, France, 2021. Emerging Infectious Diseases.

Andraud M., Hammami P., Hayes BH., Galvis JA., Vergne T., Machado G., Rose N. (2022) Modelling African swine fever virus spread in pigs using time-respective network data: scientific support for decision-makers. Transboundary and Emerging Diseases.

Chakraborty D., Guinat C., Müller N.F., Briand F.X., Andraud M., Scoizec A., Lebouquin S., Niqueux E., Schmitz A., Grasland B., Guérin J.L., Paul M.C., Vergne T. (2022) Phylodynamic analysis of the highly pathogenic avian influenza H5N8 epidemic in France, 2016-17. Transboundary and Emerging Diseases.

Gaide N.,Lucas M.N., Delpont M., Croville G., Bouwman K.M., Papanikolaou A., van der Woude R., Gagarinov I.A., Boons G.J., de Vries R.P., Volmer R., Teillaud A., Vergne T., Bleuart C., Le Loc’h G., Delverdier M., Guérin, J.L. (2022) Pathobiology of highly pathogenic H5 avian influenza viruses in naturally infected galliformes and anseriformes in France during winter 2015-2016. Veterinary Research.

Bauzile B., Sicard G., Guinat C., Andraud M., Rose N., Hammami P., Durand B., Paul MC., Vergne T. (2022) Unravelling direct and indirect contact patterns between duck farms in France and their association with the 2016-2017 epidemic of highly pathogenic avian influenza (H5N8). Preventive Veterinary Medicine.

2021

Patterson SJ., Clarke C., Clutton-Brock TH., Miller MA., Parsons SDC., Pfeiffer DU., Vergne T., Drewe J. (2021) Combining analytical approaches and multiple sources of information to improve interpretation of diagnostic test results for tuberculosis in wild meerkats. Animals.

Souvestre M., Delpont M., Guinat C., Dumas C., Guichard L., Manis L., Duret H., Guérin JL., Le Loc’h G. (2021) Backyard poultry flocks in France: a diversity of owners and biosecurity practices. Preventive Veterinary Medicine.
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Chakraborty D. (2021) RNA viruses: what leads to parallel evolution?ELife.

Delpont M., Guinat C., Guérin J.L., Le leu E., Vaillancourt J.P., Paul M.C. (2021) Biosecurity measures in French poultry farms are associated with farm type and location.Preventive Veterinary Medicine.

Hirschinger J., Vergne T., Corre T., Hingrat Y., Guerin JL., Le Loc’h G. (2021) Exposure assessment for avian influenza and Newcastle disease viruses from peridomestic wild birds in a conservation breeding site in the Unite Arab Emirates. Transboundary and Emerging Diseases.

Vergne T., Gubbins S., Guinat C., Bauzile B., Delpont M., Chakraborty D., Gruson H., Roche B., Andraud M., Paul M., Guerin JL. (2021) Inferring within-flock transmission dynamics of highly pathogenic avian influenza H5N8 virus in France, 2020. Transboundary and Emerging Diseases.

Guinat C., Vergne T., Kocher A., Chakraborty D., Paul M.C., Ducatez M., Städler T. (2021) What can phylodynamics bring to animal health research?Trends in Ecology and Evolution.

Dorea F.C., Vergne T., Brennan M., van Schaik G., Barrett D., Carmo L.P., Robinson P.A., Brodbelt, D.C., McIntyre K.M. (2021) SVEPM 2020 – resilience and community support in the first year of the COVID-19 pandemic: the Society for Veterinary Epidemiology and Preventive Annual Conference, extraordinarily held online. Preventive Veterinary Medicine.

Lim J.S., Vergne T., Pak S.I., Kim E. (2021) Modelling the spatial distribution of ASF-infected wild boars in South Korea using 2019-2020 national surveillance data. Animals.

Hayes B., Andraud M., Salazar L., Rose N., Vergne T. (2021) Mechanistic modelling of African swine fever: a systematic review. Preventive Veterinary Medicine.

Guinat C., Tago D., Corre T., Selinger C., Djidjou-Demasse R., Paul M., Raboisson D., Nguyen T.T.T., Inui K., Long P.T., Padungtod, P., Vergne T. (2021) Optimizing the early detection of low pathogenic avian influenza H7N9 virus in live bird markets. Journal of the Royal Society Interface.

Paul M.C., Fournié G. (2021) Contexts matter: Epidemiology and control of avian and swine influenza in contrasted settings. Transboundary and Emerging Diseases.
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Gaide N., Foret-Lucas C., Figueroa T., Vergne T., Lucas MN., Robertet L., Souvestre M., Croville G., Le Loc’h G., Delverdier M., Guérin JL. (2021) Viral tropism and detection of clade 2.3.4.4b H5N8 highly pathogenic avian influenza viruses in feathers of ducks and geese. Scientific Reports.

Hirschinger J., Marescot L., Hingrat Y., Guérin J.L., Le Loc’h G., Vergne T. (2021) Newcastle disease virus transmission dynamics in wild peridomestic birds in the United Arab Emirates. Scientific Reports.

Lestrade M., Vergne T., Guinat C., Berny P., Lafitte J., Novella C., Le Loc’h G. (2021) Risk of anticoagulant rodenticide exposure for wildlife, Parc National des Pyrénées, France. Journal of Wildlife Diseases.

2020

Adam C., Fortané N., Ducrot C., Paul M.C. (2020) Transition Pathways Toward the Prudent Use of Antimicrobials: The Case of Free-Range Broiler Farmers in France. Frontiers in Veterinary Science.

Vergne T., Andraud M., Bonnet S., De Regge N., Fite J., Etoré F., Garigliany MM., Jori F., Lempereur L., Le Potier MF., Quillery E., Saegerman C., Vial L., Bouhsira E. (2020) Mechanical transmission of African swine fever virus by Stomoxys calcitrans: insights from a mechanistic model. Transboundary and Emerging Diseases.

Saegerman C., Bonnet S., Bouhsira E., De Regge N., Fite J., Etoré F., Garigliany MM., Jori F., Lempereur L., Le Potier MF., Quillery E., Vergne T., Vial L. (2020) An expert opinion assessment of blood-feeding arthropods based on theircapacity to transmis African swine fever virus in Metropolitan France. Transboundary and Emerging Diseases.

Bonnet S., Bouhsira E., De Regge N., Fite J., Etoré F., Garigliany MM., Jori F., Lempereur L., Le Potier MF., Quillery E., Saegerman C., Vergne T., Vial L. (2020) Putative Role of Arthropod Vectors in African Swine Fever Virus Transmission in Relation to Their Bio-Ecological Properties. Viruses.

Vergne T., Guinat C., Pfeiffer D.U. (2020) Undetected circulation of African swine fever in wild boar, Asia. Emerging Infectious Diseases.

Guinat C., Comin A., Kratzer G., Durand B., Delesalle L., Delpont M., Guérin J.L., Paul, M. (2020) Biosecurity and risk factors for highly pathogenic avian influenza (H5N8) virus infection in duck farms, France. Transboundary and Emerging Diseases.

Willgert K, Meyer A, Tung DX, Thu NV, Long PT, Newman S, Thuy NTT, Padungtod P, Fournié G, Pfeiffer DU, Vergne T (2020) Transmission of highly pathogenic avian influenza in the nomadic free-grazing duck production system in Viet Nam. Scientific Reports.

Dorea F., Vergne T., Boden L., Brennan M., McKintyre M. (2020) SVEPM 2019: Implication of pathogen and antimicrobial evolution on animal health, herd management and policy making. Preventive Veterinary Medicine.

​Delpont M., Racicot M., Durivage A., Forlini L., Guérin JL., Vaillancourt JP., Paul MC. (2020) Determinants of biosecurity practices in French duck farms after a H5N8 highly pathogenic avian influenza epidemic: The effect of farmer knowledge, attitudes and personality traits. Transboundary and Emerging Diseases.

Fusade-Boyer M., Pato P.S., Komlan M., Dogno K., Batawui D., Go-Maro E., McKenzie P., Guinat C., Secula A., Paul M., Webby R.J., Tran A., Waret-Szkuta A., Ducatez M.F. (2020) Risk mapping of influenza D virus occurrence in ruminants and swine in Togo using a spatial multicriteria decision analysis approach. Viruses.
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Guinat, C., Durand, B., Vergne, T., Corre, T., Scoizec, A., Lebouquin-Leneveu, S., Guérin, J.L., Paul, M.C. (2020) Role of live duck movement networks in shaping avian influenza disease transmission, France 2016-17. Emerging Infectious Diseases.

2019

Buczinski S, Arsenault J, Kostoulas P, Corbiere F , Fecteau G, Dendukuri N. (2019) Accuracy of paratuberculosis diagnostic tests in small ruminants: protocol for a systematic review and meta-analysis. Anim Health Res Rev. 

Mathevon, Y., Foucras, G., Corbiere F. (2019) Flock sensitivity and specificity of pooled fecal qPCR and pooled serum ELISA for screening ovine paratuberculosis. PLoS One.

Vergne T. and Drewe J. (2019, in press) Quantifying and addressing bias associated with imperfect observation processes in epidemiological studies. Frontiers in Veterinary Science.

Hirschinger J., Muñoz M.C., Hingrat Y., Vergne T., Guérin J.L., Le Loc’h G. (2019) Exposure to and circulation of avian influenza and Newcastle disease viruses in peridomestic wild birds in the United Arab Emirates. Journal of Wildlife Diseases. 

Adam C., Fortané N., Coviglio A., Delesalle L., Ducrot C., Paul M.C. (2019) Epidemiological assessment of the factors associated with antimicrobial use in French free-range broilers. BMC Veterinary Research.

Ducrot C., Adam C., Beaugrand F., Belloc C., Bluhm J., Chauvin C., Cholton M., Collineau L., Faisnel J., Fortané N., Hellec F., Hémonic A., Joly N., Lhermie G., Magne MA., Paul MC., Poizat A., Raboisson D., Rousset N. (2019) Apport de la sociologie à l’étude de la réduction d’usage des antibiotiques.INRA Productions Animales.

Guinat C., Artois J., Bronner A., Guérin J.L., Gilbert M., Paul M.C. (2019) Duck production system and highly pathogenic avian influenza H5N8 in France, 2016-2017. Scientific Reports.

Paul M.C., Vergne T., Mulatti P., Tiensin T., Iglesias I. (2019) Epidemiology of avian influenza viruses. Frontiers in Veterinary Science.

Andronico A, Courcoul A, Bronner A, Scoizec A, Lebouquin-Leneveu S, Guinat C, Paul MC, Durand B, Cauchemez S. (2019) Highly pathogenic avian influenza H5N8 in South-West France 2016-2017: a modeling study of control strategies. Epidemics.

Thanapongtharm W., Paul M.C., Wiratsudakul A., Wongphruksasoong V., Kalpravidh W., Wongsathapornchai K., Damrongwatanapokin S., Schar D., Gilbert M. (2019) A spatial assessment of Nipah virus transmission in Thailand pig farms using multi-criteria decision analysis. BMC Veterinary Research.

Combelles L., Corbiere F., Calavas D., Bronner A., Hénaux V., Vergne T. (2019) Impact of imperfect disease detectability on the identification of risk factors in Veterinary epidemiology.Frontiers in Veterinary Science.

Guinat C, Rouchy N, Camy F, Guerin JL, and Paul MC. (2019) Exploring the wind-borne spread of Highly Pathogenic Avian Influenza H5N8 during the 2016-2017 epizootic in France. Avian Diseases. 

Souvestre M, Guinat C, Niqueux E, Robertet L, Croville G, Paul MC, Schitz A., Bronner, A., Eterradossi, N., Guérin, J.L. (2019) Role of backyard flocks in transmission dynamics of highly pathogenic avian influenza A(H5N8) clade 2.3.4.4, France, 2016–2017. Emerging Infectious Diseases.

​Vergne T., Meyer A., Long P.T., Elkholly D., Inui K., Padungtod P., Newman S., Fournié G., Pfeiffer D.U., (2019) Optimising the detectability of H5N1 and H5N6 highly pathogenic avian influenza viruses in Vietnamese live-bird markets. Scientific Reports.

2018

Delpont, M., Blondel, V., Robertet, L., Duret, H., Guérin, J.L., Vaillancourt, J.P., Paul, M.C.  2018. Biosecurity practices on foie gras duck farms, Southwest France. Preventive Veterinary Medicine. 

Falzon, L.C., Lechner, I., Chantziaras, I., Collineau, L., Courcoul, A., Filippitzi, M.-E., Laukkanen-Ninios, R., Peroz, C., Pinto Ferreira, J., Postma, M., Prestmo, P.G., Phythian, C.J., Sarno, E., Vanantwerpen, G., Vergne, T., Grindlay, D.J.C., Brennan, M.L., 2018. Quantitative Outcomes of a One Health approach to Study Global Health Challenges.Ecohealth. 

Guinat, C., Nicolas, G., Vergne, T., Bronner, A., Durand, B., Courcoul, A., Gilbert, M., Guérin, J.-L., Paul, M.C., 2018. Spatio-temporal patterns of highly pathogenic avian influenza virus subtype H5N8 spread, France, 2016 to 2017. Euro Surveillance.

Mellor, K.C., Meyer, A., Elkholly, D.A., Fournié, G., Long, P.T., Inui, K., Padungtod, P., Gilbert, M., Newman, S.H., Vergne, T., Pfeiffer, D.U., Stevens, K.B., 2018. Comparative Epidemiology of Highly Pathogenic Avian Influenza Virus H5N1 and H5N6 in Vietnamese Live Bird Markets: Spatiotemporal Patterns of Distribution and Risk Factors. Frontiers in Veterinary Science.

Meyer, A., Dinh, T.X., Han, T.A., Do, D.V., Nhu, T.V., Pham, L.T., Nguyen, T.T.T., Newman, S., Häsler, B., Pfeiffer, D.U., Vergne, T., 2018. Trade patterns facilitating highly pathogenic avian influenza virus dissemination in the free-grazing layer duck system in Vietnam. Transboundary and Emerging Diseases.

2017

Bolea, R., Hedman, C., López-Pérez, Ó., Marín, B., Vidal, E., Pumarola, M., Corbière, F., Romero, A., Moreno, B., Martín-Burriel, I., Andréoletti, O., Badiola, J.J., 2017. Experimental transmission to a calf of an isolate of Spanish classical scrapie. Journal of General Virology.

Buzdugan, S.N., Vergne, T., Grosbois, V., Delahay, R.J., Drewe, J.A., 2017. Inference of the infection status of individuals using longitudinal testing data from cryptic populations: Towards a probabilistic approach to diagnosis. Scientific Reports.

Delabouglise, A., Antoine-Moussiaux, N., Tatong, D., Chumkaeo, A., Binot, A., Fournié, G., Pilot, E., Phimpraphi, W., Kasemsuwan, S., Paul, M.C., Duboz, R., Salem, G., Peyre, M., 2017. Cultural Practices Shaping Zoonotic Diseases Surveillance: The Case of Highly Pathogenic Avian Influenza and Thailand Native Chicken Farmers. Transboundary and Emerging Diseases.

Fournier, A., Masson, M., Corbière, F., Mila, H., Mariani, C., Grellet, A., Chastant-Maillard, S., 2017. Epidemiological analysis of reproductive performances and kitten mortality rates in 5,303 purebred queens of 45 different breeds and 28,065 kittens in France. Reproduction in Domestic Animals.

Guinat, C., Vergne, T., Jurado-Diaz, C., Sánchez-Vizcaíno, J.M., Dixon, L., Pfeiffer, D.U., 2017. Effectiveness and practicality of control strategies for African swine fever: what do we really know? Veterinary Record.

Korennoy, F.I., Gulenkin, V.M., Gogin, A.E., Vergne, T., Karaulov, A.K., 2017. Estimating the Basic Reproductive Number for African Swine Fever Using the Ukrainian Historical Epidemic of 1977. Transboundary and Emerging Diseases.

Lacroux, C., Cassard, H., Simmons, H., Yves Douet, J., Corbière, F., Lugan, S., Costes, P., Aron, N., Huor, A., Tillier, C., Schelcher, F., Andreoletti, O., 2017. Classical scrapie transmission in ARR/ARR genotype sheep. Journal of General Virology.

Le Loc’h, G., Souley, M.-N.A., Bertagnoli, S., Paul, M.C., 2017. Low Impact of Avian Pox on Captive-Bred Houbara Bustard Breeding Performance. Frontiers in Veterinary Science.

Mathevon, Y., Foucras, G., Falguières, R., Corbiere, F., 2017. Estimation of the sensitivity and specificity of two serum ELISAs and one fecal qPCR for diagnosis of paratuberculosis in sub-clinically infected young-adult French sheep using latent class Bayesian modeling. BMC Veterinary Research.

Meyer, A., Dinh, T.X., Nhu, T.V., Pham, L.T., Newman, S., Nguyen, T.T.T., Pfeiffer, D.U., Vergne, T., 2017. Movement and contact patterns of long-distance free-grazing ducks and avian influenza persistence in Vietnam. PLoS ONE.

Meyer, A., Zamir, L., Ben Yair Gilboa, A., Gelman, B., Pfeiffer, D.U., Vergne, T., 2017. Quantitative Assessment of the Risk of Release of Foot-and-Mouth Disease Virus via Export of Bull Semen from Israel. Risk Analysis.

Vergne, T., Chen-Fu, C., Li, S., Cappelle, J., Edwards, J., Martin, V., Pfeiffer, D.U., Fusheng, G., Roger, F.L., 2017. Pig empire under infectious threat: risk of African swine fever introduction into the People’s Republic of China. Veterinary Record.

Vergne, T., Gogin, A., Pfeiffer, D.U., 2017. Statistical Exploration of Local Transmission Routes for African Swine Fever in Pigs in the Russian Federation, 2007-2014. Transboundary and Emerging Diseases.

Waret-Szkuta, A., Alarcon, P., Hasler, B., Rushton, J., Corbière, F., Raboisson, D., 2017. Economic assessment of an emerging disease: the case of Schmallenberg virus in France. OIE Journal.